Plot PhecodeX PheWAS results

Usage

plot_phewasx(
  data,
  beta_var = "beta",
  log10p_var = "log10p",
  color_var = "color",
  phe_var = "exposure",
  threshold_color = "red",
  order_reset = TRUE,
  group_space = 20,
  label_top = 5,
  title = NULL,
  genetic_offset = 15,
  color_dot_pt = 15,
  color_dot_symbol = "●",
  label_size = 3
)

Arguments

data: data of PheWAS results
beta_var: name of column containing beta values
log10p_var: name of column containing -log10(p) values
color_var: name of column containing color values
phe_var: name of column containing phecode values
threshold_color: color of dashed line at p = 0.05
order_reset: reset ordering of phecodes
group_space: space between groups
label_top: number of top phecodes to label
title: title of plot
genetic_offset: offset for genetic phecodes
color_dot_pt: size of color dots
color_dot_symbol: symbol for color dots
label_size: size of labels

Value

a Manhattan plot of PheWAS results

Examples

if (FALSE) { # \dontrun{
## TO DO
} # }